Subject: CCM3.6 on es6000; Beginner
From: Wei Gong (gong@climate.cestm.albany.edu)
Date: Wed Nov 04 1998 - 16:13:46 MST
Hi, all,
I tried to run the T42 example of CCM3.6 on es6000 (Sun SUNOS; 16 CPUs). Follow the instruction, I did the following steps (I only modified "build.noncray.csh"):
(1) download "ccm3.6.code.tar.gz" and "ccm3.6.datasets.tar" from CCM3 home page to "/esdata3/gong/CCM3_1/"
(2) gunzip ccm3.6.code.tar.gz
(3) tar -xvf ccm3.6.code.tar
I got four directives: "bld", "doc", "src", and "tools" under directive "/esdata3/gong/CCM3_1/ccm/".
(4) (in "/esdata3/gong/CCM3_1/ccm") mkdir data; cd data; tar -xvf ccm3.6.datasets.tar
I got several initial and boundary files in "/esdata3/gong/CCM3_1/ccm/data"
(5) download "netcdf software" from CCM3 home page and install it on "/esdata3/gong/CCM3_1/netcdf-3.4/"
(6) cd /esdata3/gong/CCM3_1/ccm/bld; edit "build.noncray.csh" (I attached my version of "build.noncray.csh". I use "!!!" to indicate which lines have been modified). Please note that in "build.noncray.gw.csh" the "/usr/local/bin/make" is the "gnumake".
(7) /esdata3/gong/CCM3_1/ccm/bld/build.noncray.csh
Then, I got:
**************************************************************************
BUILDING CCM3 WITH THE FOLLOWING OPTIONS
========================================
Target Machine : SUN
Dynamics : eul
Ocean config : dom
Buffers incore : TRUE
Initial dataset : SEP1.T42.0198.nc
SST Dataset : T42M5079.nc
Ozone Dataset : ozn.0596.r8.nc
LSM Dataset : arbitrary initialization
Number of Longitudes: 128
Number of Latitudes : 64
Number of tracers : 1
Spectral truncation : 42, 42, 42
creating Filepath
No match
No match
No match
No match
No match
No match
Create new params.h
Create new preproc.h
Create new misc.h
Compiling CCM ... see /esdata3/gong/CCM3_1/ccm/run/compile_log.atm for log
**************************************************************************
I also attach the error message in "/esdata3/gong/CCM3_1/ccm/run/compile_log.atm".
Thank you very much for your help.
Wei Gong
Encl 1: ccm/run/compile_log.atm
*************************************************************************
/esdata3/gong/CCM3_1/ccm/src/../bld/Makefile:247: no file name for `-include'
f77 -o /esdata3/gong/CCM3_1/ccm/run/atm -L/esdata3/gong/CCM3_1/netcdf-3.4/lib -lnetcdf
Undefined first referenced
symbol in file
main /opt/SUNWspro/SC4.2/lib/crt1.o
ld: fatal: Symbol referencing errors. No output written to /esdata3/gong/CCM3_1/ccm/run/atm
make: *** [/esdata3/gong/CCM3_1/ccm/run/atm] Error 1
*************************************************************************
Encl 2.: My build.noncray.csh
*************************************************************************
#!/bin/csh -f
setenv MODEL_EXEDIR /esdata3/gong/CCM3_1/ccm/run !!!
setenv MODEL_SRCDIR /esdata3/gong/CCM3_1/ccm/src !!!
setenv MODEL_DATDIR /esdata3/gong/CCM3_1/ccm/data !!!
if !(-d $MODEL_DATDIR) mkdir -p $MODEL_DATDIR
if !(-d $MODEL_EXEDIR) mkdir -p $MODEL_EXEDIR; cd $MODEL_EXEDIR;
if !(-d obj) mkdir obj ; cd obj
setenv CPU SUN !!!
setenv LIB_NETCDF /esdata3/gong/CCM3_1/netcdf-3.4/lib !!!
setenv INC_NETCDF /esdata3/gong/CCM3_1/netcdf-3.4/include !!!
setenv MAXCPUS 4 !!!
setenv PLON 128
setenv PLAT 64
setenv PLEV 18
setenv PTRM 42
setenv PTRN 42
setenv PTRK 42
setenv PCNST 1
setenv DYNAMICS eul
setenv OCEAN dom
set DATINI = SEP1.T42.0198.nc # CCM3 initial data
set DATSST = T42M5079.nc # sst data
set DATOZN = ozn.0596.r8.nc # ozone data
set DATLSM = 'arbitrary initialization' # LSM initial data
cd $MODEL_EXEDIR
cat >! atm.parm << EOF
\$CCMEXP
caseid = 'ccm3bld'
datadir = '$MODEL_DATDIR'
ncdata = '$DATINI'
bndtvs = '$DATSST'
bndtvo = '$DATOZN'
incorbuf = .TRUE.
incorhst = .TRUE.
incorrad = .TRUE.
iradsw = -1
iradlw = -1
iradae = -12
dtime = 1200.
nestep = -1
irt = 0
iyear_ad = 1950
\$
\$lsmexp
datadir = '$MODEL_DATDIR'
finidat = '$DATLSM'
\$
EOF
echo
echo "BUILDING CCM3 WITH THE FOLLOWING OPTIONS"
echo "========================================"
echo "Target Machine : $CPU"
echo "Dynamics : $DYNAMICS"
echo "Ocean config : $OCEAN"
echo "Buffers incore : TRUE"
echo "Initial dataset : $DATINI"
echo "SST Dataset : $DATSST"
echo "Ozone Dataset : $DATOZN"
echo "LSM Dataset : $DATLSM"
echo "Number of Longitudes: $PLON"
echo "Number of Latitudes : $PLAT"
echo "Number of tracers : $PCNST"
echo "Spectral truncation : $PTRM, $PTRN, $PTRK"
echo
cd $MODEL_EXEDIR
set FN = obj/Filepath
cat >! tmp << EOF
$MODEL_SRCDIR/control
$MODEL_SRCDIR/dynamics
$MODEL_SRCDIR/dynamics/$DYNAMICS
$MODEL_SRCDIR/$OCEAN
$MODEL_SRCDIR/physics
$MODEL_SRCDIR/csm_share
$MODEL_SRCDIR/ccmlsm_share
$MODEL_SRCDIR/lsm
$MODEL_SRCDIR/mathutil
$MODEL_SRCDIR/srchutil
EOF
cmp -s $FN tmp
if ( $status != 0 )then
if ( -e Filepath ) then
echo "Filepath changed, removing all files except Filepath"
else
echo "creating Filepath"
endif
\rm $MODEL_EXEDIR/obj/[A-Z]*.o
\rm $MODEL_EXEDIR/obj/[a-l]*.o
\rm $MODEL_EXEDIR/obj/[m-z]*.o
\rm $MODEL_EXEDIR/obj/[A-Z]*.d
\rm $MODEL_EXEDIR/obj/[a-l]*.d
\rm $MODEL_EXEDIR/obj/[m-z]*.d
mv -f tmp $FN
else
echo "Use previous $FN"
\rm tmp
endif
cd $MODEL_EXEDIR/obj
set FN = params.h
cat >! tmp << EOF
#ifndef PARAMS_SET
#define PARAMS_SET
#define PNATS 0
#define POZLEV 23
#define PCNST $PCNST
#define PLEV $PLEV
#define PLEVR $PLEV
#define PLON $PLON
#define PLAT $PLAT
#define PTRM $PTRM
#define PTRN $PTRN
#define PTRK $PTRK
#endif
EOF
cmp -s $FN tmp
if ( $status != 0 )then
echo "Create new $FN"
mv -f tmp $FN
else
echo "Use previous $FN"
\rm tmp
endif
if ( $OCEAN == 'dom' ) then
set coup_som = '#undef COUP_SOM'
endif
if ( $OCEAN == 'som' ) then
set coup_som = '#define COUP_SOM'
endif
cd $MODEL_EXEDIR/obj
set FN = misc.h
cat >! tmp << EOF
#ifndef MISC_SET
#define MISC_SET
#define $CPU
#undef PVP
#define REALTYPE MPI_DOUBLE_PRECISION
$coup_som
#undef COUP_CSM
#define NCPREC NF_FLOAT
#define SHELL_MSS
#define FORTFFT
#undef SPMD
#endif
EOF
cmp -s $FN tmp
if ( $status != 0 )then
echo "Create new $FN"
mv -f tmp $FN
else
echo "Use previous $FN"
\rm tmp
endif
cd $MODEL_EXEDIR/obj
echo "Compiling CCM ... see $MODEL_EXEDIR/compile_log.atm for log"
echo
touch $MODEL_EXEDIR/compile_log.atm
echo '------------------------------------------------------------------' >>& $MODEL_EXEDIR/compile_log.atm
date >>& $MODEL_EXEDIR/compile_log.atm
echo '------------------------------------------------------------------' >>& $MODEL_EXEDIR/compile_log.atm
/usr/local/bin/make -j4 -e -f $MODEL_SRCDIR/../bld/Makefile >>& $MODEL_EXEDIR/compile_log.atm || exit 3 !!!
echo 'Running CCM ... '
echo
cd $MODEL_EXEDIR
env MP_SET_NUMTHREADS=$MAXCPUS atm < atm.parm >&! atm.log.$$
echo "CCM Finished - see atm.log.$$ for log"
echo
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